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Date published 
June 2010

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Epigenetic Drug & Diagnostic Pipelines: DNA Methylation, HDAC Inhibitors, and Emerging New Targets - Table of Contents

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Author: Lucy Jean Sannes, Ph.D., M.B.A.

EXECUTIVE SUMMARY

CHAPTER 1
INTRODUCTION 
Scope and Organization of the Report 

CHAPTER 2
OVERVIEW OF EPIGENETICS 

2.1. Definition of Epigenetics 
2.2. Mechanisms of Epigenetics 
DNA Methylation 
Histone Modification 
Other Mechanisms 
2.3. Methods to Detect Differences in DNA Methylation 
2.4. Targets for Current and Emerging Epigenetic Drugs 

CHAPTER 3
DIAGNOSTIC COMPANIES IN EPIGENETICS 

3.1. Companies Developing Epigenetic-Based Diagnostic Tests 
Epigenomics 
OncoMethylome Sciences 
Orion Genomics 
Other Diagnostic Activities in Epigenetics (DNA Methylation) 
Diagnostic Activities in Epigenetics (Histone Modification) 
3.2. Clinical Laboratories Offering Tests to Detect DNA Methylation Changes 
3.3. Epigenetics/DNA Methylation Test Agreements 

CHAPTER 4
MAJOR DISEASES/CONDITIONS TARGETED BY NEW AND/OR EMERGING EPIGENETIC DRUGS 

4.1. Hematological Cancers 
4.2. Solid Tumors 
4.3. Other Emerging Disease Indications 

CHAPTER 5
EPIGENETIC DRUGS ON THE MARKET AND IN DEVELOPMENT 

5.1. Drugs Targeting DNA Methylation (DNA Hypomethylation Drugs) 
Celgene’s Vidaza 
Eisai’s and Johnson & Johnson’s Dacogen 
SuperGen 
5.2. HDAC Inhibitors 
Merck’s Zolinza (vorinostat) 
Celgene’s Istodax (romidepsin) 
4SC  
Acetylon Pharmaceuticals 
Celleron Therapeutics 
Chroma Therapeutics 
EnVivo Pharmaceuticals 
Johnson & Johnson Pharmaceutical Research & Development 
Karus Therapeutics 
MethylGene 
Novartis 
Oncolys BioPharma 
Pharmacyclics 
Repligen 
Syndax Pharmaceuticals 
TopoTarget and Spectrum Pharmaceuticals 
5.3. Emerging Therapies Directed Against Other Epigenetic Targets 
CellCentric 
Constellation Pharmaceuticals 
Epizyme 
SuperGen 

CHAPTER 6
BUSINESS CONSIDERATIONS IN EPIGENETICS 

6.1. Epigenetics Markets 
Diagnostic Epigenetic Market 
Therapeutic Epigenetic Market 
6.2. Major Challenges/Hurdles and Strategic Issues for Diagnostic Companies in Epigenetics 
Need for More Biomarkers, Validation Studies, and Outcome Studies 
Delivery of New Diagnostic Tests: IVD versus CLIA Laboratory 
Penetrating the Market: Diagnostic Platform(s) 
Health Economics and Reimbursement 
Intellectual Property Issues 
Penetrating the Market: Physician Education 
Does the Test Affect Physicians’ Decisions? 
Acceptance by Experts; Incorporation into Guidelines 
Physician Education 
6.3. Major Challenges/Hurdles and Strategic Issues for Therapeutic Companies in Epigenetics 
Safety Concerns with Epigenetic Drugs 
Certain Market Segments Becoming Highly Competitive (HDAC Inhibitors) 
Development Issues Common to Other Emerging Cancer Therapies 
Development Issues Common to Other Companies Focusing on Novel Targets 
Issues Facing Companies as They Launch Novel Epigenetic Therapies 
6.4. Evaluating DNA Methylation Markers for Non-Epigenetic Cancer Therapies 
6.5. Evolution of Companies in Epigenetics 
Diagnostic Epigenetic Companies 
Agreements in the Epigenetic Therapy Market; Companies Entering and Exiting the Market 

CHAPTER 7
EXPERT INTERVIEWS 
7.1. Walter C. Ogier, President and Chief Executive Officer, Acetylon Pharmaceuticals 
7.2. Nessa Carey, PhD, Scientific Director, CellCentric  
7.3. Alan Drummond, PhD, Chief Scientific Officer, Chroma Therapeutics 
7.4. Mark A. Goldsmith, MD, PhD, President and Chief Executive Officer, Constellation Pharmaceuticals 
7.5. Kees Been, President and Chief Executive Officer
Dana Hilt, MD, Senior Vice President, Clinical Development and Chief Medical Officer, EnVivo Pharmaceuticals 
7.6. Oliver Schacht, PhD, CFO, Epigenomics AG, CEO, Epigenomics Inc. 
7.7. Robert Gould, PhD, President and Chief Executive Officer, Epizyme 
7.8. Jeffrey M. Besterman, PhD, Executive Vice President, Research & Development and Chief Scientific Officer, MethylGene 
7.9. Harry Schrickx, WW Vice President Business Development, OncoMethylome Sciences SA, President, OncoMethylome Sciences, Inc. 
7.10. Kamran Tahamtanzadeh, Founder & CEO, PrognosDx Health 
7.11. James R. Rusche, PhD, Senior Vice President, Research and Development, Repligen 
7.12. Joanna Horobin, MD, President & Chief Executive Officer, Syndax Pharmaceuticals 
7.13. Henri Lichenstein, PhD, Chief Development Officer, TopoTarget A/S  

REFERENCES

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